The main egs_brachy application class. See the Main Page for full documentation. More...

#include <egs_brachy.h>

Inheritance diagram for EB_Application:

Collaboration diagram for EB_Application:

Public Member Functions
	EB_Application (int argc, char **argv)
	egs_brachy constructor
	~EB_Application ()
	egs_brachy destructor
void	describeUserCode () const
	Print information about the egs_brachy user code.
void	describeSimulation ()
	Describe the simulation.
void	printIncludedFiles ()
int	initSimulation ()
	set the run mode and then call EGS_AdvancedApplication::initSimulation
int	initRunControl ()
	egs_brachy specific run control initialization
int	initRunMode ()
	Get run mode from the input file.
int	initScoring ()
	initialze all scoring and variance reduction parameters
int	initVarianceReduction ()
	initialze all variance reduction parameters
int	initRussianRoulette (EGS_Input *)
	Initialize Russian roulette variance reduction if requested.
int	initBCSE (EGS_Input *)
	Initialize BCSE variance reduction if requested.
int	ausgab (int iarg)
	user scoring of dose, spectra etc
int	outputData ()
	Output intermediate results. The egs_brachy version outputs the standard egs++ data along with egs_brachy specific information such as phantom and spectrum scoring information. egs_brachy also allows you to output data in gzip format.
int	outputDataHelper (ostream *)
	helper function for outputData
int	egsApplicationOutputData (ostream *)
	helper function for outputData
int	egsAdvApplicationOutputData (ostream *)
	helper function for outputData
int	egsBrachyOutputData (ostream *)
	helper function for outputData
int	readData ()
	Read data required for restarting simulations.
int	readDataHelper (istream *)
	helper function for outputData
int	egsApplicationReadData (istream *)
	helper function for outputData
int	egsAdvApplicationReadData (istream *)
	helper function for outputData
int	egsBrachyReadData (istream *)
	helper function for outputData
int	combineResults ()
void	resetCounter ()
	Reset the application to a 'pristine' state. Adapted from egs_application.cpp to allow combining in text or gzip format.
int	addState (istream &data)
	Add data from a parallel job. Add standard egs++ data as well as egs_brachy specific scoring information.
void	outputResults ()
void	getCurrentResult (double &sum, double &sum2, double &norm, double &count)
	Reports the current results for this batch of the simulation.
EB_Phantom *	getPhantomByName (string name)
	takes a phantom geometry name and returns the EB_Phantom object
virtual void	startNewParticle ()
	Set source ecut/pcut if different from global ecut/pcut.
virtual void	enterNewRegion ()
virtual int	runSimulation ()
string	getOutputVolcorFormat ()
int	howManyJobsDone ()

Public Attributes
int	nsources
	total number of particle sources in current simulation
EGS_Float	effective_histories
Latch	latch_control

Protected Member Functions
void	addRecycledParticlesToStack (EGS_Particle *p, bool new_hist=false)
void	copyParticleToSourceLoc (EGS_Particle *p, int source, bool kill_orig, bool rotate, EGS_Float new_wt)
void	doPhotonSplitting (int)
int	simulateSingleShower ()
int	startNewShower ()
int	initGeometry ()
	override default initGeometry so we can manually create our own geometry.
int	initSource ()
int	initSourceTransforms ()
	read in the location of all particle sources and optionally apply a source coordinate transform mapping local placements to world coordinates
vector< EGS_AffineTransform * >	createTransforms (EGS_Input *input)

Private Types
enum	RunMode { RM_NORMAL , RM_SUPERPOSITION , RM_VC_ONLY }

Private Member Functions
int	createPhantoms ()
	set up Phantom objects for any geometries that user has requested scoring for
int	correctVolumes ()
	run the volume correction routines
int	checkSourceOverlaps (EGS_Input *)
void	initTrackLengthScoring (EGS_Input *)
	track length scoring initialization
void	initMuenData (EGS_Input *)
	load muen data for requested media
void	initOutputFiles (EGS_Input *)
	set up whether to output extra info files
void	initPHSPScoring (EGS_Input *)
	set up phsp scoring
void	initEDepScoring (EGS_Input *)
	energy deposition scoring initialization
void	initScatScoring (EGS_Input *)
	energy deposition scoring initialization
void	clearAusgabCalls ()
	disable all ausgab calls
void	enableAusgabCalls (int ncalls, AusgabCall calls[])
	enable an array of ausgab calls
void	initGCRScoring (EGS_Input *)
	setup which phantom/region will be used for getCurrentResult
void	initAusgabCalls ()
	setup any required ausgab calls
void	initDoseScaling (EGS_Input *)
	Initialize dose scaling factor if requested.
void	initXCCScaling (EGS_Input *)
	Initialize cross section scaling if requested.
void	initSpectrumScoring (EGS_Input *)
	Initialize all spectrum scoring objects.
int	initCrossSections ()
void	discardTopParticle (int idisc=1)
void	calcEffectiveHistories ()
bool	isStuck ()

Private Attributes
RunMode	run_mode
	Which run mode are we using (RM_NORMAL, RM_SUPERPOSITION or RM_VC_ONLY *‍/.
string	run_mode_name
EnergyScoringStats *	escoring
	Energy related scoring/stats.
vector< BaseSpectrumScorer * >	spectrum_scorers
RecycleOpts *	recycle_opts
bool	single_generator
bool	is_phsp_source
vector< EGS_Float >	source_weights
int	active_source
PHSPControl *	phsp
bool	score_tlen
	true when tracklength estimator is enabled
bool	score_edep
	true when energy deposition is enabled
bool	score_scat
	true when scatter scoring is enabled
string	output_egsdat_format
	text or gzip
bool	output_3ddose_files
	false if run mode is 'volume correction only'
string	output_dose_format
	text or gzip
bool	output_egsphant
	true if user requests egsphant ouput
string	output_egsphant_format
	text or gzip
bool	output_voxinfo
	true if user requests voxel info file
string	output_voxinfo_format
	text or gzip
vector< string >	output_volcor_phantoms
	vector of phantom names to output volume correctino files for
string	output_volcor_format
	text or gzip
int	record_n_init
	if > 0 write initial pos of record_n_init particles to {input_file}.pinit
vector< EGS_Vector >	p_init_locs
EGS_Vector	last_position
EGS_Float	last_R
EGS_Float	cur_R
int	steps_at_same_loc
EGS_I64	n_stuck
EGS_BaseGeometry *	source_envelope_geom
	geometry that the sources are embedded in
EGS_ASwitchedEnvelope *	superpos_geom
	an ASwitchedEnv cast of simulation geometry.
vector< EB_Phantom * >	phantom_geoms
	pointers to all of the phantom objects
vector< EGS_AffineTransform * >	source_transforms
	transforms to locations of all sources
EGS_AffineTransform *	base_transform
	same as source_transforms[0]
EGS_AffineTransform *	base_transform_inv
	same as source_transforms[0].inverse()
bool	applied_source_coord_transform = false
	true if a source coordinate transform was composed in
map< int, EGS_Interpolator * >	media_muen
	Map from medium index to muen interpolator for that medium.
map< string, string >	media_muen_names
bool	do_brem_split
int	nbr_split
	Number of times to split bremstrahlung phtons.
bool	do_bcse
int	bcse_med_num
EGS_Float	bcse_factor
EGS_Float	flu_cutoff
	fluorescent photon cutoff energy
EGS_Float	source_ecut
	ecut for source objects
EGS_Float	source_pcut
	pcut for source objects
EGS_Float	global_ecut
	ecut for source objects
EGS_Float	global_pcut
	pcut for source objects
bool	global_i_do_rr
	enable range rejection outside of sources
EGS_Float	global_e_max_rr
	max range rejection energy globally
bool	source_i_do_rr
	enable range rejection in sources
EGS_Float	source_e_max_rr
	max range rejection energy for source objects
GeomInfo	ginfo
	meta data about the geometries
EB_Phantom *	gcr_phantom
	phantom object to use in getCurrentResult (defaults to 1st phantom)
int	gcr_phantom_reg
	region of phantom to use for getCurrentResult (default to 0)
map< string, vector< int > >	extra_scoring_reg
map< string, vector< EGS_Float > >	extra_scoring_vols
map< string, vector< EGS_Float > >	extra_scoring_mass
map< string, EGS_ScoringArray * >	extra_scoring_doses
map< string, EGS_ScoringArray * >	extra_scoring_doses_edep
ebvolcor::Results	source_vc_results
	results from source volume correctio box phantom
ebvolcor::Results	gen_vc_results
	results from general volume correction
ebvolcor::FileResults	file_vc_results
	results from precomputed volume correction
Publisher	pevent_pub
	Particle event publisher.
EB_TimingTree	timing_blocks
	Track CPU times of various functions.
map< int, EGS_I64 >	steps_in_sources
map< int, EGS_I64 >	steps_in_phantoms
map< int, EGS_I64 >	steps_in_other
ogzstream *	gz_data_out
	GZip file for outputing egsdat.
igzstream *	gz_data_in
	GZip file for outputing egsdat.

Static Private Attributes
static const EGS_Float	DEFAULT_BCSE_FACTOR = 100
static string	revision = "$Revision: 0.9.1 $"
	the usercode revision number

Detailed Description

The main egs_brachy application class. See the Main Page for full documentation.

Definition at line 91 of file egs_brachy.h.

Member Enumeration Documentation

◆ RunMode

enum EB_Application::RunMode

private

Enumerator
RM_NORMAL	Standard running mode.
RM_SUPERPOSITION	Superposition mode for intersource effects.
RM_VC_ONLY	Run volume correction routines then quit.

Definition at line 93 of file egs_brachy.h.

Constructor & Destructor Documentation

◆ EB_Application()

EB_Application::EB_Application	(	int	argc,
		char **	argv )

inline

egs_brachy constructor

Definition at line 271 of file egs_brachy.h.

◆ ~EB_Application()

EB_Application::~EB_Application ( )

inline

egs_brachy destructor

Definition at line 308 of file egs_brachy.h.

Member Function Documentation

◆ addRecycledParticlesToStack()

void EB_Application::addRecycledParticlesToStack	(	EGS_Particle *	p,
		bool	new_hist = false )

protected

Definition at line 1623 of file egs_brachy.cpp.

◆ addState()

int EB_Application::addState ( istream & data )

Add data from a parallel job. Add standard egs++ data as well as egs_brachy specific scoring information.

Definition at line 2589 of file egs_brachy.cpp.

◆ ausgab()

int EB_Application::ausgab ( int iarg )

user scoring of dose, spectra etc

Definition at line 1685 of file egs_brachy.cpp.

◆ calcEffectiveHistories()

void EB_Application::calcEffectiveHistories ( )

private

Definition at line 1943 of file egs_brachy.cpp.

◆ checkSourceOverlaps()

int EB_Application::checkSourceOverlaps ( EGS_Input * inp )

private

Definition at line 476 of file egs_brachy.cpp.

◆ clearAusgabCalls()

void EB_Application::clearAusgabCalls ( )

private

disable all ausgab calls

Definition at line 1282 of file egs_brachy.cpp.

◆ combineResults()

int EB_Application::combineResults ( )

Definition at line 2500 of file egs_brachy.cpp.

◆ copyParticleToSourceLoc()

void EB_Application::copyParticleToSourceLoc	(	EGS_Particle *	p,
		int	source,
		bool	kill_orig,
		bool	rotate,
		EGS_Float	new_wt )

protected

Definition at line 1522 of file egs_brachy.cpp.

◆ correctVolumes()

int EB_Application::correctVolumes ( )

private

run the volume correction routines

Definition at line 625 of file egs_brachy.cpp.

◆ createPhantoms()

int EB_Application::createPhantoms ( )

private

set up Phantom objects for any geometries that user has requested scoring for

Definition at line 716 of file egs_brachy.cpp.

◆ createTransforms()

vector< EGS_AffineTransform * > EB_Application::createTransforms ( EGS_Input * input )

protected

Definition at line 391 of file egs_brachy.cpp.

◆ describeSimulation()

void EB_Application::describeSimulation ( )

Describe the simulation.

Add extra information to egs_applications describeSimulation

Definition at line 128 of file egs_brachy.cpp.

◆ describeUserCode()

void EB_Application::describeUserCode ( ) const

Print information about the egs_brachy user code.

Definition at line 114 of file egs_brachy.cpp.

◆ discardTopParticle()

void EB_Application::discardTopParticle ( int idisc = 1 )

private

Definition at line 1615 of file egs_brachy.cpp.

◆ doPhotonSplitting()

void EB_Application::doPhotonSplitting ( int iarg )

protected

Definition at line 1891 of file egs_brachy.cpp.

◆ egsAdvApplicationOutputData()

int EB_Application::egsAdvApplicationOutputData ( ostream * out )

helper function for outputData

Definition at line 2235 of file egs_brachy.cpp.

◆ egsAdvApplicationReadData()

int EB_Application::egsAdvApplicationReadData ( istream * in )

helper function for outputData

Definition at line 2380 of file egs_brachy.cpp.

◆ egsApplicationOutputData()

int EB_Application::egsApplicationOutputData ( ostream * out )

helper function for outputData

Definition at line 2211 of file egs_brachy.cpp.

◆ egsApplicationReadData()

int EB_Application::egsApplicationReadData ( istream * in )

helper function for outputData

Definition at line 2357 of file egs_brachy.cpp.

◆ egsBrachyOutputData()

int EB_Application::egsBrachyOutputData ( ostream * out )

helper function for outputData

Definition at line 2262 of file egs_brachy.cpp.

◆ egsBrachyReadData()

int EB_Application::egsBrachyReadData ( istream * in )

helper function for outputData

Definition at line 2408 of file egs_brachy.cpp.

◆ enableAusgabCalls()

void EB_Application::enableAusgabCalls	(	int	ncalls,
		AusgabCall	calls[] )

private

enable an array of ausgab calls

Definition at line 1410 of file egs_brachy.cpp.

◆ enterNewRegion()

void EB_Application::enterNewRegion ( )

virtual

Definition at line 1596 of file egs_brachy.cpp.

◆ getCurrentResult()

void EB_Application::getCurrentResult	(	double &	sum,
		double &	sum2,
		double &	norm,
		double &	count )

Reports the current results for this batch of the simulation.

Definition at line 2082 of file egs_brachy.cpp.

◆ getOutputVolcorFormat()

string EB_Application::getOutputVolcorFormat ( )

inline

Definition at line 479 of file egs_brachy.h.

◆ getPhantomByName()

EB_Phantom * EB_Application::getPhantomByName ( string name )

takes a phantom geometry name and returns the EB_Phantom object

Definition at line 996 of file egs_brachy.cpp.

◆ howManyJobsDone()

int EB_Application::howManyJobsDone ( )

Definition at line 2644 of file egs_brachy.cpp.

◆ initAusgabCalls()

void EB_Application::initAusgabCalls ( )

private

setup any required ausgab calls

For efficiency, only those ausgab calls which are strictly neccessary should be enabled

Definition at line 1289 of file egs_brachy.cpp.

◆ initBCSE()

int EB_Application::initBCSE ( EGS_Input * inp )

Initialize BCSE variance reduction if requested.

Definition at line 1224 of file egs_brachy.cpp.

◆ initCrossSections()

int EB_Application::initCrossSections ( )

private

Definition at line 876 of file egs_brachy.cpp.

◆ initDoseScaling()

void EB_Application::initDoseScaling ( EGS_Input * scoring_options )

private

Initialize dose scaling factor if requested.

Definition at line 1473 of file egs_brachy.cpp.

◆ initEDepScoring()

void EB_Application::initEDepScoring ( EGS_Input * scoring_options )

private

energy deposition scoring initialization

Definition at line 1417 of file egs_brachy.cpp.

◆ initGCRScoring()

void EB_Application::initGCRScoring ( EGS_Input * inp )

private

setup which phantom/region will be used for getCurrentResult

Definition at line 952 of file egs_brachy.cpp.

◆ initGeometry()

int EB_Application::initGeometry ( )

protected

override default initGeometry so we can manually create our own geometry.

This allows us to track region numbers for each geometry object individually

Definition at line 313 of file egs_brachy.cpp.

◆ initMuenData()

void EB_Application::initMuenData ( EGS_Input * scoring_options )

private

load muen data for requested media

Definition at line 1353 of file egs_brachy.cpp.

◆ initOutputFiles()

void EB_Application::initOutputFiles ( EGS_Input * inp )

private

set up whether to output extra info files

Definition at line 1007 of file egs_brachy.cpp.

◆ initPHSPScoring()

void EB_Application::initPHSPScoring ( EGS_Input * inp )

private

set up phsp scoring

Definition at line 1036 of file egs_brachy.cpp.

◆ initRunControl()

int EB_Application::initRunControl ( )

egs_brachy specific run control initialization

Definition at line 816 of file egs_brachy.cpp.

◆ initRunMode()

int EB_Application::initRunMode ( )

Get run mode from the input file.

Definition at line 843 of file egs_brachy.cpp.

◆ initRussianRoulette()

int EB_Application::initRussianRoulette ( EGS_Input * scoring_options )

Initialize Russian roulette variance reduction if requested.

Definition at line 1198 of file egs_brachy.cpp.

◆ initScatScoring()

void EB_Application::initScatScoring ( EGS_Input * scoring_options )

private

energy deposition scoring initialization

Definition at line 1436 of file egs_brachy.cpp.

◆ initScoring()

int EB_Application::initScoring ( )

initialze all scoring and variance reduction parameters

Definition at line 918 of file egs_brachy.cpp.

◆ initSimulation()

int EB_Application::initSimulation ( )

set the run mode and then call EGS_AdvancedApplication::initSimulation

Definition at line 796 of file egs_brachy.cpp.

◆ initSource()

int EB_Application::initSource ( )

protected

Definition at line 753 of file egs_brachy.cpp.

◆ initSourceTransforms()

int EB_Application::initSourceTransforms ( )

protected

read in the location of all particle sources and optionally apply a source coordinate transform mapping local placements to world coordinates

Definition at line 413 of file egs_brachy.cpp.

◆ initSpectrumScoring()

void EB_Application::initSpectrumScoring ( EGS_Input * scoring_input )

private

Initialize all spectrum scoring objects.

Definition at line 1261 of file egs_brachy.cpp.

◆ initTrackLengthScoring()

void EB_Application::initTrackLengthScoring ( EGS_Input * scoring_options )

private

track length scoring initialization

Definition at line 1301 of file egs_brachy.cpp.

◆ initVarianceReduction()

int EB_Application::initVarianceReduction ( )

initialze all variance reduction parameters

Definition at line 1047 of file egs_brachy.cpp.

◆ initXCCScaling()

void EB_Application::initXCCScaling ( EGS_Input * scoring_options )

private

Initialize cross section scaling if requested.

Definition at line 1486 of file egs_brachy.cpp.

◆ isStuck()

bool EB_Application::isStuck ( )

private

Definition at line 1655 of file egs_brachy.cpp.

◆ outputData()

int EB_Application::outputData ( )

Output intermediate results. The egs_brachy version outputs the standard egs++ data along with egs_brachy specific information such as phantom and spectrum scoring information. egs_brachy also allows you to output data in gzip format.

Definition at line 2315 of file egs_brachy.cpp.

◆ outputDataHelper()

int EB_Application::outputDataHelper ( ostream * out )

helper function for outputData

Definition at line 2301 of file egs_brachy.cpp.

◆ outputResults()

void EB_Application::outputResults ( )

Definition at line 1962 of file egs_brachy.cpp.

◆ printIncludedFiles()

void EB_Application::printIncludedFiles ( )

Definition at line 293 of file egs_brachy.cpp.

◆ readData()

int EB_Application::readData ( )

Read data required for restarting simulations.

Definition at line 2458 of file egs_brachy.cpp.

◆ readDataHelper()

int EB_Application::readDataHelper ( istream * in )

helper function for outputData

Definition at line 2443 of file egs_brachy.cpp.

◆ resetCounter()

void EB_Application::resetCounter ( )

Reset the application to a 'pristine' state. Adapted from egs_application.cpp to allow combining in text or gzip format.

Definition at line 2562 of file egs_brachy.cpp.

◆ runSimulation()

int EB_Application::runSimulation ( )

virtual

Definition at line 2092 of file egs_brachy.cpp.

◆ simulateSingleShower()

int EB_Application::simulateSingleShower ( )

protected

Definition at line 2100 of file egs_brachy.cpp.

◆ startNewParticle()

void EB_Application::startNewParticle ( )

virtual

Set source ecut/pcut if different from global ecut/pcut.

Definition at line 1581 of file egs_brachy.cpp.

◆ startNewShower()

int EB_Application::startNewShower ( )

protected

Definition at line 2185 of file egs_brachy.cpp.

Member Data Documentation

◆ active_source

int EB_Application::active_source

private

Definition at line 112 of file egs_brachy.h.

◆ applied_source_coord_transform

bool EB_Application::applied_source_coord_transform = false

private

true if a source coordinate transform was composed in

Definition at line 150 of file egs_brachy.h.

◆ base_transform

EGS_AffineTransform* EB_Application::base_transform

private

same as source_transforms[0]

Definition at line 148 of file egs_brachy.h.

◆ base_transform_inv

EGS_AffineTransform* EB_Application::base_transform_inv

private

same as source_transforms[0].inverse()

Definition at line 149 of file egs_brachy.h.

◆ bcse_factor

EGS_Float EB_Application::bcse_factor

private

Definition at line 161 of file egs_brachy.h.

◆ bcse_med_num

int EB_Application::bcse_med_num

private

Definition at line 160 of file egs_brachy.h.

◆ cur_R

EGS_Float EB_Application::cur_R

private

Definition at line 138 of file egs_brachy.h.

◆ DEFAULT_BCSE_FACTOR

const EGS_Float EB_Application::DEFAULT_BCSE_FACTOR = 100

staticprivate

Definition at line 162 of file egs_brachy.h.

◆ do_bcse

bool EB_Application::do_bcse

private

Definition at line 159 of file egs_brachy.h.

◆ do_brem_split

bool EB_Application::do_brem_split

private

Definition at line 156 of file egs_brachy.h.

◆ effective_histories

EGS_Float EB_Application::effective_histories

Definition at line 371 of file egs_brachy.h.

◆ escoring

EnergyScoringStats* EB_Application::escoring

private

Energy related scoring/stats.

Definition at line 103 of file egs_brachy.h.

◆ extra_scoring_doses

map<string, EGS_ScoringArray* > EB_Application::extra_scoring_doses

private

Definition at line 184 of file egs_brachy.h.

◆ extra_scoring_doses_edep

map<string, EGS_ScoringArray* > EB_Application::extra_scoring_doses_edep

private

Definition at line 185 of file egs_brachy.h.

◆ extra_scoring_mass

map<string, vector<EGS_Float> > EB_Application::extra_scoring_mass

private

Definition at line 183 of file egs_brachy.h.

◆ extra_scoring_reg

map<string, vector<int> > EB_Application::extra_scoring_reg

private

Definition at line 181 of file egs_brachy.h.

◆ extra_scoring_vols

map<string, vector<EGS_Float> > EB_Application::extra_scoring_vols

private

Definition at line 182 of file egs_brachy.h.

◆ file_vc_results

ebvolcor::FileResults EB_Application::file_vc_results

private

results from precomputed volume correction

Definition at line 189 of file egs_brachy.h.

◆ flu_cutoff

EGS_Float EB_Application::flu_cutoff

private

fluorescent photon cutoff energy

Definition at line 164 of file egs_brachy.h.

◆ gcr_phantom

EB_Phantom* EB_Application::gcr_phantom

private

phantom object to use in getCurrentResult (defaults to 1st phantom)

Definition at line 178 of file egs_brachy.h.

◆ gcr_phantom_reg

int EB_Application::gcr_phantom_reg

private

region of phantom to use for getCurrentResult (default to 0)

Definition at line 179 of file egs_brachy.h.

◆ gen_vc_results

ebvolcor::Results EB_Application::gen_vc_results

private

results from general volume correction

Definition at line 188 of file egs_brachy.h.

◆ ginfo

GeomInfo EB_Application::ginfo

private

meta data about the geometries

Definition at line 176 of file egs_brachy.h.

◆ global_e_max_rr

EGS_Float EB_Application::global_e_max_rr

private

max range rejection energy globally

Definition at line 171 of file egs_brachy.h.

◆ global_ecut

EGS_Float EB_Application::global_ecut

private

ecut for source objects

Definition at line 167 of file egs_brachy.h.

◆ global_i_do_rr

bool EB_Application::global_i_do_rr

private

enable range rejection outside of sources

Definition at line 170 of file egs_brachy.h.

◆ global_pcut

EGS_Float EB_Application::global_pcut

private

pcut for source objects

Definition at line 168 of file egs_brachy.h.

◆ gz_data_in

igzstream* EB_Application::gz_data_in

private

GZip file for outputing egsdat.

Definition at line 200 of file egs_brachy.h.

◆ gz_data_out

ogzstream* EB_Application::gz_data_out

private

GZip file for outputing egsdat.

Definition at line 199 of file egs_brachy.h.

◆ is_phsp_source

bool EB_Application::is_phsp_source

private

Definition at line 109 of file egs_brachy.h.

◆ last_position

EGS_Vector EB_Application::last_position

private

Definition at line 136 of file egs_brachy.h.

◆ last_R

EGS_Float EB_Application::last_R

private

Definition at line 137 of file egs_brachy.h.

◆ latch_control

Latch EB_Application::latch_control

Definition at line 373 of file egs_brachy.h.

◆ media_muen

map<int, EGS_Interpolator *> EB_Application::media_muen

private

Map from medium index to muen interpolator for that medium.

Definition at line 152 of file egs_brachy.h.

◆ media_muen_names

map<string, string> EB_Application::media_muen_names

private

Definition at line 153 of file egs_brachy.h.

◆ n_stuck

EGS_I64 EB_Application::n_stuck

private

Definition at line 140 of file egs_brachy.h.

◆ nbr_split

int EB_Application::nbr_split

private

Number of times to split bremstrahlung phtons.

Definition at line 157 of file egs_brachy.h.

◆ nsources

int EB_Application::nsources

total number of particle sources in current simulation

Definition at line 369 of file egs_brachy.h.

◆ output_3ddose_files

bool EB_Application::output_3ddose_files

private

false if run mode is 'volume correction only'

Definition at line 122 of file egs_brachy.h.

◆ output_dose_format

string EB_Application::output_dose_format

private

text or gzip

Definition at line 123 of file egs_brachy.h.

◆ output_egsdat_format

string EB_Application::output_egsdat_format

private

text or gzip

Definition at line 120 of file egs_brachy.h.

◆ output_egsphant

bool EB_Application::output_egsphant

private

true if user requests egsphant ouput

Definition at line 124 of file egs_brachy.h.

◆ output_egsphant_format

string EB_Application::output_egsphant_format

private

text or gzip

Definition at line 125 of file egs_brachy.h.

◆ output_volcor_format

string EB_Application::output_volcor_format

private

text or gzip

Definition at line 131 of file egs_brachy.h.

◆ output_volcor_phantoms

vector<string> EB_Application::output_volcor_phantoms

private

vector of phantom names to output volume correctino files for

Definition at line 130 of file egs_brachy.h.

◆ output_voxinfo

bool EB_Application::output_voxinfo

private

true if user requests voxel info file

Definition at line 127 of file egs_brachy.h.

◆ output_voxinfo_format

string EB_Application::output_voxinfo_format

private

text or gzip

Definition at line 128 of file egs_brachy.h.

◆ p_init_locs

vector<EGS_Vector> EB_Application::p_init_locs

private

Definition at line 134 of file egs_brachy.h.

◆ pevent_pub

Publisher EB_Application::pevent_pub

private

Particle event publisher.

Definition at line 191 of file egs_brachy.h.

◆ phantom_geoms

vector<EB_Phantom *> EB_Application::phantom_geoms

private

pointers to all of the phantom objects

Definition at line 145 of file egs_brachy.h.

◆ phsp

PHSPControl* EB_Application::phsp

private

Definition at line 114 of file egs_brachy.h.

◆ record_n_init

int EB_Application::record_n_init

private

if > 0 write initial pos of record_n_init particles to {input_file}.pinit

Definition at line 133 of file egs_brachy.h.

◆ recycle_opts

RecycleOpts* EB_Application::recycle_opts

private

Definition at line 107 of file egs_brachy.h.

◆ revision

string EB_Application::revision = "$Revision: 0.9.1 $"

staticprivate

the usercode revision number

Definition at line 202 of file egs_brachy.h.

◆ run_mode

RunMode EB_Application::run_mode

private

Which run mode are we using (RM_NORMAL, RM_SUPERPOSITION or RM_VC_ONLY *‍/.

Definition at line 100 of file egs_brachy.h.

◆ run_mode_name

string EB_Application::run_mode_name

private

Definition at line 101 of file egs_brachy.h.

◆ score_edep

bool EB_Application::score_edep

private

true when energy deposition is enabled

Definition at line 117 of file egs_brachy.h.

◆ score_scat

bool EB_Application::score_scat

private

true when scatter scoring is enabled

Definition at line 118 of file egs_brachy.h.

◆ score_tlen

bool EB_Application::score_tlen

private

true when tracklength estimator is enabled

Definition at line 116 of file egs_brachy.h.

◆ single_generator

bool EB_Application::single_generator

private

Definition at line 108 of file egs_brachy.h.

◆ source_e_max_rr

EGS_Float EB_Application::source_e_max_rr

private

max range rejection energy for source objects

Definition at line 174 of file egs_brachy.h.

◆ source_ecut

EGS_Float EB_Application::source_ecut

private

ecut for source objects

Definition at line 165 of file egs_brachy.h.

◆ source_envelope_geom

EGS_BaseGeometry* EB_Application::source_envelope_geom

private

geometry that the sources are embedded in

Definition at line 142 of file egs_brachy.h.

◆ source_i_do_rr

bool EB_Application::source_i_do_rr

private

enable range rejection in sources

Definition at line 173 of file egs_brachy.h.

◆ source_pcut

EGS_Float EB_Application::source_pcut

private

pcut for source objects

Definition at line 166 of file egs_brachy.h.

◆ source_transforms

vector<EGS_AffineTransform *> EB_Application::source_transforms

private

transforms to locations of all sources

Definition at line 147 of file egs_brachy.h.

◆ source_vc_results

ebvolcor::Results EB_Application::source_vc_results

private

results from source volume correctio box phantom

Definition at line 187 of file egs_brachy.h.

◆ source_weights

vector<EGS_Float> EB_Application::source_weights

private

Definition at line 111 of file egs_brachy.h.

◆ spectrum_scorers

vector<BaseSpectrumScorer *> EB_Application::spectrum_scorers

private

Definition at line 104 of file egs_brachy.h.

◆ steps_at_same_loc

int EB_Application::steps_at_same_loc

private

Definition at line 139 of file egs_brachy.h.

◆ steps_in_other

map<int, EGS_I64> EB_Application::steps_in_other

private

Definition at line 197 of file egs_brachy.h.

◆ steps_in_phantoms

map<int, EGS_I64> EB_Application::steps_in_phantoms

private

Definition at line 196 of file egs_brachy.h.

◆ steps_in_sources

map<int, EGS_I64> EB_Application::steps_in_sources

private

Definition at line 195 of file egs_brachy.h.

◆ superpos_geom

EGS_ASwitchedEnvelope* EB_Application::superpos_geom

private

an ASwitchedEnv cast of simulation geometry.

Definition at line 143 of file egs_brachy.h.

◆ timing_blocks

EB_TimingTree EB_Application::timing_blocks

private

Track CPU times of various functions.

Definition at line 193 of file egs_brachy.h.

The documentation for this class was generated from the following files:

/Users/marc/Developer/clrp/EGSnrc-eb/HEN_HOUSE/user_codes/egs_brachy/egs_brachy/egs_brachy.h
/Users/marc/Developer/clrp/EGSnrc-eb/HEN_HOUSE/user_codes/egs_brachy/egs_brachy/egs_brachy.cpp

Public Member Functions

Public Attributes

Protected Member Functions

Private Types

Private Member Functions

Private Attributes

Static Private Attributes

Detailed Description

Member Enumeration Documentation

◆ RunMode

Constructor & Destructor Documentation

◆ EB_Application()

◆ ~EB_Application()

Member Function Documentation

◆ addRecycledParticlesToStack()

◆ addState()

◆ ausgab()

◆ calcEffectiveHistories()

◆ checkSourceOverlaps()

◆ clearAusgabCalls()

◆ combineResults()

◆ copyParticleToSourceLoc()

◆ correctVolumes()

◆ createPhantoms()

◆ createTransforms()

◆ describeSimulation()

◆ describeUserCode()

◆ discardTopParticle()

◆ doPhotonSplitting()

◆ egsAdvApplicationOutputData()

◆ egsAdvApplicationReadData()

◆ egsApplicationOutputData()

◆ egsApplicationReadData()

◆ egsBrachyOutputData()

◆ egsBrachyReadData()

◆ enableAusgabCalls()

◆ enterNewRegion()

◆ getCurrentResult()

◆ getOutputVolcorFormat()

◆ getPhantomByName()

◆ howManyJobsDone()

◆ initAusgabCalls()

◆ initBCSE()

◆ initCrossSections()

◆ initDoseScaling()

◆ initEDepScoring()

◆ initGCRScoring()

◆ initGeometry()

◆ initMuenData()

◆ initOutputFiles()

◆ initPHSPScoring()

◆ initRunControl()

◆ initRunMode()

◆ initRussianRoulette()

◆ initScatScoring()

◆ initScoring()

◆ initSimulation()

◆ initSource()

◆ initSourceTransforms()

◆ initSpectrumScoring()

◆ initTrackLengthScoring()

◆ initVarianceReduction()

◆ initXCCScaling()

◆ isStuck()

◆ outputData()

◆ outputDataHelper()

◆ outputResults()

◆ printIncludedFiles()

◆ readData()

◆ readDataHelper()

◆ resetCounter()

◆ runSimulation()

◆ simulateSingleShower()

◆ startNewParticle()

◆ startNewShower()

Member Data Documentation

◆ active_source

◆ applied_source_coord_transform

◆ base_transform

◆ base_transform_inv